| BIN | 2008 cM | NAME | FULL_NAME | Author |
| 1.01 | brk2 | brick2 | Laurie Smith | |
| 1.03 | 71.8 | phyB1 | phytochromeB1 | Patrick Dubois,Tom Brutnell |
| 1.05 | 121.5 | bif2 | barren inflorescence2 | Paula McSteen |
| 1.05 | 202.0 | tha4 | thylakoid assembly4 | Alice Barkan |
| 1.05 | wtf1 | what's this factor?1 | Alice Barkan | |
| 1.07 | 164.8 | crs1 | chloroplast RNA splicing1 | Alice Barkan |
| 1.10 | 222.5 | phyA1 | phytochromeA1 | Patrick Dubois, Tom Brutnell |
| 1.11 | 262.8 | ts6 | tasselseed6 | George Chuck |
| 1.12 | phyC1 | phytochromeC1 | Patrick Dubois, Tom Brutnell | |
| 2.06 | 57.3 | tha8 | thylakoid assembly8 | Alice Barkan |
| 3.02 | 24.4 | cg1 | corngrass1 | George Chuck |
| 3.03 | 32.8 | ra2 | ramosa2 | Erik Vollbrecht, Sarah Hake |
| 3.04 | 57.3 | caf2 | CRS2 associated factor2 | Alice Barkan |
| 3.04 | 57.3 | tha1 | thylakoid assembly1 | Alice Barkan |
| 3.05 | 78.0 | ts4 | tasselseed4 | George Chuck |
| 3.06 | rnc1 | ribonuclease1 | Alice Barkan | |
| 3.08 | 161.8 | spi1 | sparse inflorescence1 | Paula McSteen |
| 4.07 | ppr5 | pentricopeptide5 | Alice Barkan | |
| 5.00 | crp2 | chloroplast RNA processing2 | Alice Barkan | |
| 5.01 | phyA2 | phytochromeA2 | Patrick Dubois, Tom Brutnell | |
| 5.01 | phyC2 | phytochromeC2 | Patrick Dubois, Tom Brutnell | |
| 5.03 | 50.0 | csy1 | chloroplast SecY-1 | Alice Barkan |
| 5.03 | 74.4 | dvd1 | developmental disaster1 | Paula McSteen |
| 5.08 | 167.3 | brk1 | brick1 | Laurie Smith |
| 6.01 | 30.3 | si1 | silky1 | George Chuck |
| 6.01 | why1 | whirly1 | Alice Barkan | |
| 6.02 | ppr10 | pentricopeptide10 | Alice Barkan | |
| 6.05 | 77.8 | tan1 | tangled1 | Laurie Smith |
| 6.05 | afd1 | absence of first division1 | Rachel Wang | |
| 6.07 | 134.1 | tdy1 | tie-dyed1 | David Braun |
| 7.00 | 3.5 | ppr2 | pentricopeptide2 | Alice Barkan |
| 7.02 | 37.9 | sgo1 | shugosin centromeric cohesion1 | Rachel Wang |
| 7.02 | 45.3 | caf1 | CRS2 associated factor1 | Alice Barkan |
| 7.03 | 102.0 | crp1 | chloroplast RNA processing1 | Alice Barkan |
| 7.05 | 137.1 | bd1 | branched silkless1 | George Chuck |
| 8.01 | 28.8 | crs2 | chloroplast RNA splicing2 | Alice Barkan |
| 8.03 | bif1 | barren inflorescence1 | Paula McSteen | |
| 8.05 | add1 | alternative discordia1 | Laurie Smith | |
| 8.06 | 105.5 | elm1 | elongated mesocotyl1 | Patrick Dubois, Tom Brutnell |
| 9.04 | phyB2 | phytochromeB2 | Patrick Dubois, Tom Brutnell | |
| 10.01 | brk3 | brick3 | Laurie Smith | |
| 10.04 | dcd1 | discordia1 | Laurie Smith | |
| 10.04 | vp10 | viviparous10 | Mark Settles | |
| 10.06 | 102.8 | csr1 | chloroplast srp54 receptor1 | Alice Barkan |
| unk | crs4 | chloroplast RNA splicing4 | Alice Barkan | |
| unk | ppr4 | pentricopeptide4 | Alice Barkan |